Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Adeg_1685PFAM: Sporulation stage III protein AB. (172 aa)    
Predicted Functional Partners:
Adeg_1686
TIGRFAM: stage III sporulation protein AA; KEGG: Os07g0187400; hypothetical protein.
 
  
 0.997
Adeg_1684
TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein.
 
  
 0.987
Adeg_1682
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: dma:DMR_27920 putative drug resistance transporter.
 
  
 0.985
Adeg_1683
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD.
 
  
 0.980
Adeg_1680
Hypothetical protein.
 
  
 0.973
Adeg_1681
PFAM: Sporulation stage III protein AF.
 
  
 0.933
Adeg_1679
KEGG: Ankyrin repeat protein.
 
  
 0.929
Adeg_0130
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429.
  
  
 0.861
Adeg_1322
PFAM: protein of unknown function DUF95 transmembrane.
  
  
 0.832
Adeg_2141
TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256.
  
     0.759
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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