STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_1863Ribulose bisphosphate carboxylase, type III; KEGG: tcx:Tcr_0838 ribulose bisophosphate carboxylase; TIGRFAM: ribulose bisphosphate carboxylase, type III; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit-like; Belongs to the RuBisCO large chain family. (421 aa)    
Predicted Functional Partners:
Adeg_1862
PFAM: phosphoribulokinase/uridine kinase; KEGG: phosphoribulokinase; K00855 phosphoribulokinase.
 
  
 0.958
Adeg_1857
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: gsu:GSU1629 glyceraldehyde 3-phosphate dehydrogenase 1; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; dihydrodipicolinate reductase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.798
Adeg_1858
KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.794
Adeg_1860
PFAM: Transketolase central region; Transketolase domain protein; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit.
       0.781
Adeg_1861
PFAM: Transketolase domain protein; KEGG: gme:Gmet_0551 transketolase subunit A.
       0.781
tal-2
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
     
 0.776
fbp-2
Protein of unknown function DUF100; Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3- phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P).
       0.773
Adeg_0966
PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase.
  
  
 0.580
pgk
PFAM: phosphoglycerate kinase; KEGG: pca:Pcar_1332 phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.566
Adeg_1667
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: hdu:HD1810 thioredoxin; Belongs to the thioredoxin family.
    
 
 0.484
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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