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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_1900Hypothetical protein. (161 aa)    
Predicted Functional Partners:
Adeg_1901
Hypothetical protein.
       0.773
Adeg_1902
KEGG: nis:NIS_1818 4Fe-4S ferredoxin.
       0.768
Adeg_1903
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dar:Daro_2584 molybdopterin oxidoreductase:molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.768
Adeg_1899
KEGG: dar:Daro_2581 hypothetical protein.
       0.741
Adeg_1898
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU1302 sensor histidine kinase/response regulator.
       0.516
Adeg_1904
KEGG: gsu:GSU3153 iron-sulfur cluster-binding protein.
       0.496
Adeg_1897
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bxe:Bxe_B0815 two component transcriptional regulator.
       0.429
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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