STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_1908TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: nam:NAMH_1439 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (407 aa)    
Predicted Functional Partners:
Adeg_1907
PFAM: acriflavin resistance protein; KEGG: tgr:Tgr7_0304 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.986
Adeg_1983
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1127 hypothetical protein.
 
 
 0.918
Adeg_0045
PFAM: outer membrane efflux protein; KEGG: cvi:CV_3925 periplasmic type I secretion system.
 
 
 0.839
Adeg_1984
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_4199 putative macrolide efflux ABC transporter, ATP-binding protein.
 
 
 0.807
Adeg_1909
PFAM: regulatory protein TetR; KEGG: glo:Glov_0196 transcriptional regulator, TetR family.
 
  
 0.688
Adeg_1906
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gme:Gmet_1931 BadM/Rrf2 family transcriptional regulator.
     
 0.527
Adeg_0099
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: dze:Dd1591_3361 secretion protein HlyD family protein.
 
  
 0.506
Adeg_1986
KEGG: ade:Adeh_4152 hypothetical protein.
 
  
 0.504
Adeg_0617
PFAM: Nickel transport complex, NikM subunit, transmembrane; KEGG: ppd:Ppro_1251 ABC-type Co2+ transport system periplasmic component-like protein.
  
     0.448
Adeg_0992
PFAM: ABC-2 type transporter; KEGG: sat:SYN_00244 export ABC transporter permease protein.
  
     0.427
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.