STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_1963PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: ppd:Ppro_0724 methyl-accepting chemotaxis sensory transducer. (539 aa)    
Predicted Functional Partners:
Adeg_0243
PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: dma:DMR_20770 chemotaxis protein CheW.
 
 0.998
Adeg_0244
CheA signal transduction histidine kinase; PFAM: CheW domain protein; P2 response regulator binding domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; ATP-binding region ATPase domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; KEGG: nam:NAMH_0362 chemotaxis protein CheA.
 
 0.997
Adeg_2021
KEGG: gbm:Gbem_0626 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type.
 
 0.994
cheD
CheD, stimulates methylation of MCP protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
 0.986
Adeg_1809
PFAM: Hpt domain protein; SMART: Hpt domain protein; KEGG: dvl:Dvul_1540 CheA signal transduction histidine kinases.
 
 
 0.973
Adeg_2019
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: mxa:MXAN_6693 fibril biogenesis regulator DifD.
 
 
 0.973
Adeg_1228
PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: gsu:GSU1033 methyl-accepting chemotaxis protein.
 
 
0.931
Adeg_2038
PFAM: flagellar hook capping protein; KEGG: rlg:Rleg_0375 flagellar hook capping protein.
   
  
 0.860
Adeg_2017
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: rpf:Rpic12D_3678 flagellar motor switch protein FliN.
 
 
 0.774
Adeg_1624
Diguanylate cyclase/phosphodiesterase with GAF sensor; KEGG: tgr:Tgr7_1144 signal transduction protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein.
  
 
 0.749
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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