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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_1968PFAM: protein of unknown function DUF421; KEGG: hypothetical protein. (245 aa)    
Predicted Functional Partners:
Adeg_1967
PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gsu:GSU2013 phosphoglucomutase/phosphomannomutase family protein.
       0.782
Adeg_1248
TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; KEGG: bgl:bglu_3p1130 major facilitator superfamily MFS_1.
 
  
 0.740
Adeg_1246
TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
  
 0.739
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
       0.737
Adeg_1247
TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.716
Adeg_0601
TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein.
  
     0.659
Adeg_1694
TIGRFAM: sporulation protein YunB; PFAM: Sporulation protein YunB-like.
  
     0.658
Adeg_0297
PFAM: GerA spore germination protein; KEGG: hypothetical protein.
 
  
 0.652
Adeg_1969
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: acp:A2cp1_2010 NAD-dependent epimerase/dehydratase.
       0.636
Adeg_1965
TIGRFAM: sporulation protein, YlmC/YmxH family.
       0.634
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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