STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_2000KEGG: sfu:Sfum_2502 hypothetical protein. (431 aa)    
Predicted Functional Partners:
Adeg_2001
PFAM: Bifunctional DNA primase/polymerase; Primase 1; KEGG: dol:Dole_2704 bifunctional DNA primase/polymerase.
     
 0.778
Adeg_2002
Putative transcriptional regulator, Nlp; SMART: helix-turn-helix domain protein; KEGG: rso:RSc1159 putative transcription regulator protein.
       0.773
Adeg_1702
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: hha:Hhal_0638 IstB ATP binding domain-containing protein.
  
 
 0.745
Adeg_2003
Hypothetical protein.
       0.546
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
   
 
 0.477
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.472
Adeg_0023
KEGG: pca:Pcar_0796 hypothetical protein.
  
 
 0.459
Adeg_0024
PFAM: zinc finger CHC2-family protein; SMART: zinc finger CHC2-family protein; KEGG: cvi:CV_3763 DNA primase.
  
 
 0.459
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.459
Adeg_0693
PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; KEGG: gme:Gmet_0394 DNA primase.
  
 
 0.459
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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