STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_2003Hypothetical protein. (309 aa)    
Predicted Functional Partners:
Adeg_2000
KEGG: sfu:Sfum_2502 hypothetical protein.
       0.546
Adeg_2001
PFAM: Bifunctional DNA primase/polymerase; Primase 1; KEGG: dol:Dole_2704 bifunctional DNA primase/polymerase.
       0.546
Adeg_2002
Putative transcriptional regulator, Nlp; SMART: helix-turn-helix domain protein; KEGG: rso:RSc1159 putative transcription regulator protein.
       0.546
Adeg_2004
Hypothetical protein.
       0.431
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.