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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_2013PFAM: nickel-dependent hydrogenase large subunit; KEGG: ade:Adeh_4162 nickel-dependent hydrogenase, large subunit. (487 aa)    
Predicted Functional Partners:
Adeg_2014
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ank:AnaeK_4293 methyl-viologen-reducing hydrogenase delta subunit.
 
 
 0.994
Adeg_0332
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_16600 NuoF.
   
 
 0.934
Adeg_0157
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sat:SYN_01648 NADH:ubiquinone oxidoreductase, NADH-binding subunit.
  
 
 0.885
Adeg_2015
PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: sfu:Sfum_2148 methyl-viologen-reducing hydrogenase, delta subunit.
 
  
 0.878
Adeg_1784
PFAM: methyl-viologen-reducing hydrogenase delta subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: sfu:Sfum_2148 methyl-viologen-reducing hydrogenase, delta subunit.
 
 
 0.840
Adeg_2006
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE.
 
   
 0.749
Adeg_2009
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: dal:Dalk_2012 (NiFe) hydrogenase maturation protein HypF.
 
   
 0.740
Adeg_2007
PFAM: hydrogenase formation HypD protein; KEGG: gsu:GSU0308 hydrogenase expression/formation protein HypD.
 
   
 0.734
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.722
Adeg_2012
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: gbm:Gbem_0380 hydrogenase maturation protease.
 
  
 0.722
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
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