STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Adeg_2139PFAM: protein of unknown function DUF951. (64 aa)    
Predicted Functional Partners:
Adeg_2140
PFAM: Colicin V production protein; KEGG: stt:t3180 galactitol-specific IIC component of PTS system.
       0.788
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
     0.704
Adeg_0567
TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP-binding protein HSR1-related; KEGG: ank:AnaeK_4473 GTP-dependent nucleic acid-binding protein EngD.
  
  
 0.702
Adeg_2141
TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256.
       0.665
Adeg_1439
PFAM: protein of unknown function DUF965; Belongs to the UPF0297 family.
  
     0.639
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.628
Adeg_2137
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.544
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.529
Adeg_2134
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
       0.523
Adeg_0598
TIGRFAM: stage V sporulation protein B; PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: hypothetical protein.
  
     0.491
Your Current Organism:
Ammonifex degensii
NCBI taxonomy Id: 429009
Other names: A. degensii KC4, Ammonifex degensii KC4, Ammonifex degensii str. KC4, Ammonifex degensii strain KC4
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.