CDL12_28076 protein (Handroanthus impetiginosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CDL12_28076

CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (162 aa)

Predicted Functional Partners:

CDL12_28639

0.517

CDL12_02002

0.490

CDL12_21571

0.479

CDL12_02089

0.475

CDL12_12833

0.461

CDL12_12445

0.460

CDL12_00094

0.459

CDL12_04975

0.457

CDL12_08470

0.455

CDL12_23409

0.440

Your Current Organism:

Handroanthus impetiginosus

NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDL12_00094	CDL12_02002	A0A2G9IBL4	A0A2G9I686	Uncharacterized protein.	Uncharacterized protein.	0.510
CDL12_00094	CDL12_02089	A0A2G9IBL4	A0A2G9I5V8	Uncharacterized protein.	Uncharacterized protein.	0.497
CDL12_00094	CDL12_12445	A0A2G9IBL4	A0A2G9HBM8	Uncharacterized protein.	Uncharacterized protein.	0.409
CDL12_00094	CDL12_21571	A0A2G9IBL4	A0A2G9GKS1	Uncharacterized protein.	Uncharacterized protein.	0.498
CDL12_00094	CDL12_23409	A0A2G9IBL4	A0A2G9GFS2	Uncharacterized protein.	Tify domain-containing protein.	0.503
CDL12_00094	CDL12_28076	A0A2G9IBL4	A0A2G9G2A3	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.459
CDL12_00094	CDL12_28639	A0A2G9IBL4	A0A2G9G0N6	Uncharacterized protein.	Copper chaperone.	0.529
CDL12_02002	CDL12_00094	A0A2G9I686	A0A2G9IBL4	Uncharacterized protein.	Uncharacterized protein.	0.510
CDL12_02002	CDL12_02089	A0A2G9I686	A0A2G9I5V8	Uncharacterized protein.	Uncharacterized protein.	0.434
CDL12_02002	CDL12_04975	A0A2G9I686	A0A2G9HXR4	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.427
CDL12_02002	CDL12_21571	A0A2G9I686	A0A2G9GKS1	Uncharacterized protein.	Uncharacterized protein.	0.432
CDL12_02002	CDL12_23409	A0A2G9I686	A0A2G9GFS2	Uncharacterized protein.	Tify domain-containing protein.	0.443
CDL12_02002	CDL12_28076	A0A2G9I686	A0A2G9G2A3	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.490
CDL12_02002	CDL12_28639	A0A2G9I686	A0A2G9G0N6	Uncharacterized protein.	Copper chaperone.	0.573
CDL12_02089	CDL12_00094	A0A2G9I5V8	A0A2G9IBL4	Uncharacterized protein.	Uncharacterized protein.	0.497
CDL12_02089	CDL12_02002	A0A2G9I5V8	A0A2G9I686	Uncharacterized protein.	Uncharacterized protein.	0.434
CDL12_02089	CDL12_12445	A0A2G9I5V8	A0A2G9HBM8	Uncharacterized protein.	Uncharacterized protein.	0.541
CDL12_02089	CDL12_23409	A0A2G9I5V8	A0A2G9GFS2	Uncharacterized protein.	Tify domain-containing protein.	0.539
CDL12_02089	CDL12_28076	A0A2G9I5V8	A0A2G9G2A3	Uncharacterized protein.	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.	0.475
CDL12_02089	CDL12_28639	A0A2G9I5V8	A0A2G9G0N6	Uncharacterized protein.	Copper chaperone.	0.500

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About