STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_27741Cdc2-related protein kinase. (742 aa)    
Predicted Functional Partners:
CDL12_27925
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.802
CDL12_26585
Uncharacterized protein.
    
 0.802
CDL12_26586
CDK9 kinase-activating protein cyclin T; Belongs to the cyclin family.
    
 0.802
CDL12_17322
CDK9 kinase-activating protein cyclin T; Belongs to the cyclin family.
    
 0.802
CDL12_15566
CDK9 kinase-activating protein cyclin T; Belongs to the cyclin family.
    
 0.802
CDL12_13441
CDK9 kinase-activating protein cyclin T; Belongs to the cyclin family.
    
 0.802
CDL12_05733
CDK9 kinase-activating protein cyclin T; Belongs to the cyclin family.
    
 0.802
CDL12_09729
Cdk activating kinase (CAK)/RNA polymerase II transcription initiation; Belongs to the protein kinase superfamily.
  
 
0.782
CDL12_14982
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.739
CDL12_05187
Transcription elongation factor SPT4.
    
 0.739
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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