STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_27643Tuftelin-interacting protein TIP39, contains G-patch domain. (870 aa)    
Predicted Functional Partners:
CDL12_11806
mRNA splicing factor ATP-dependent RNA helicase.
   
 0.940
CDL12_24618
Cyclin D-interacting protein GCIP.
    
  0.893
CDL12_18561
WD40 repeat-containing protein.
   
 0.847
CDL12_17323
mRNA splicing factor.
   
 0.847
CDL12_14365
mRNA splicing factor.
   
 0.847
CDL12_28199
mRNA splicing factor.
   
 
 0.816
CDL12_21852
mRNA splicing factor ATP-dependent RNA helicase.
   
 0.810
CDL12_16673
U2-associated snRNP A' protein.
    
 
 0.798
CDL12_29109
GCFC domain-containing protein.
    
 0.782
CDL12_28658
Uncharacterized protein.
    
 
 0.781
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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