Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDL12_00143 | CDL12_00485 | A0A2G9IBG1 | A0A2G9IAI3 | Uncharacterized protein. | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | 0.999 |
CDL12_00143 | CDL12_01053 | A0A2G9IBG1 | A0A2G9I987 | Uncharacterized protein. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.992 |
CDL12_00143 | CDL12_01397 | A0A2G9IBG1 | A0A2G9I7V6 | Uncharacterized protein. | RNA polymerase II transcription initiation. | 0.997 |
CDL12_00143 | CDL12_09729 | A0A2G9IBG1 | A0A2G9HJA5 | Uncharacterized protein. | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation; Belongs to the protein kinase superfamily. | 0.939 |
CDL12_00143 | CDL12_09732 | A0A2G9IBG1 | A0A2G9HJ90 | Uncharacterized protein. | RNA polymerase II, subunit POLR2C/RPB3. | 0.961 |
CDL12_00143 | CDL12_18083 | A0A2G9IBG1 | A0A2G9GVM5 | Uncharacterized protein. | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1. | 0.998 |
CDL12_00143 | CDL12_24014 | A0A2G9IBG1 | A0A2G9GDW1 | Uncharacterized protein. | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation; Belongs to the cyclin family. | 0.884 |
CDL12_00143 | CDL12_26389 | A0A2G9IBG1 | A0A2G9G730 | Uncharacterized protein. | MAT1 domain-containing protein. | 0.974 |
CDL12_00143 | CDL12_26760 | A0A2G9IBG1 | A0A2G9G6H3 | Uncharacterized protein. | General transcription factor IIH subunit. | 0.998 |
CDL12_00143 | CDL12_28609 | A0A2G9IBG1 | A0A2G9G0S4 | Uncharacterized protein. | Uncharacterized protein. | 0.999 |
CDL12_00485 | CDL12_00143 | A0A2G9IAI3 | A0A2G9IBG1 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Uncharacterized protein. | 0.999 |
CDL12_00485 | CDL12_01053 | A0A2G9IAI3 | A0A2G9I987 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. | 0.995 |
CDL12_00485 | CDL12_01397 | A0A2G9IAI3 | A0A2G9I7V6 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | RNA polymerase II transcription initiation. | 0.999 |
CDL12_00485 | CDL12_09729 | A0A2G9IAI3 | A0A2G9HJA5 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation; Belongs to the protein kinase superfamily. | 0.996 |
CDL12_00485 | CDL12_09732 | A0A2G9IAI3 | A0A2G9HJ90 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | RNA polymerase II, subunit POLR2C/RPB3. | 0.992 |
CDL12_00485 | CDL12_18083 | A0A2G9IAI3 | A0A2G9GVM5 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB1. | 0.999 |
CDL12_00485 | CDL12_24014 | A0A2G9IAI3 | A0A2G9GDW1 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation; Belongs to the cyclin family. | 0.997 |
CDL12_00485 | CDL12_26389 | A0A2G9IAI3 | A0A2G9G730 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | MAT1 domain-containing protein. | 0.991 |
CDL12_00485 | CDL12_26760 | A0A2G9IAI3 | A0A2G9G6H3 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | General transcription factor IIH subunit. | 0.999 |
CDL12_00485 | CDL12_28609 | A0A2G9IAI3 | A0A2G9G0S4 | RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. | Uncharacterized protein. | 0.999 |
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