STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_26322Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (427 aa)    
Predicted Functional Partners:
CDL12_29699
Rb (Retinoblastoma tumor suppressor)-related protein.
   
 0.965
CDL12_11167
HMG box-containing protein.
   
 0.965
CDL12_09321
HMG box-containing protein.
   
 0.965
CDL12_02144
HMG box-containing protein.
   
 0.965
CDL12_01478
HMG box-containing protein.
   
 0.965
CDL12_25077
Chromatin remodeling complex SWI/SNF.
    
 0.944
CDL12_30080
Beta-transducin family (WD-40 repeat) protein.
   
 0.933
CDL12_11972
Beta-transducin family (WD-40 repeat) protein.
   
 0.933
CDL12_07454
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.932
CDL12_11362
MRG domain-containing protein.
    
 0.931
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.