STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_26296Putative ABC-type transport, ATPase component/CCR4 associated factor. (386 aa)    
Predicted Functional Partners:
CDL12_24425
Mitochondrial Fe/S cluster exporter, ABC superfamily.
    
0.708
CDL12_06494
Mitochondrial Fe/S cluster exporter, ABC superfamily.
    
0.708
CDL12_13351
Putative ABC-type transport, ATPase component/CCR4 associated factor.
   
 0.686
CDL12_14712
Calreticulin.
   
 0.659
CDL12_14711
Calreticulin.
   
 0.659
CDL12_04071
Uncharacterized protein.
   
 0.659
CDL12_20858
Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit.
   
 0.606
CDL12_14535
Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit.
   
 0.606
CDL12_24949
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.596
CDL12_09638
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
    
  0.596
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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