STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_24105Phosphoprotein phosphatase. (321 aa)    
Predicted Functional Partners:
CDL12_29303
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.909
CDL12_05978
Uncharacterized protein.
    
 0.909
CDL12_26791
Phosphatidate phosphatase.
    
 0.854
CDL12_23596
Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism.
    
 0.854
CDL12_17384
Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism.
    
 0.854
CDL12_12742
Mitochondrial import inner membrane translocase, subunit TIM23.
    
 0.843
CDL12_04995
Mitochondrial import inner membrane translocase, subunit TIM23.
    
 0.843
CDL12_17674
RNA polymerase I and III, subunit RPA40/RPC40.
    
 0.812
CDL12_09732
RNA polymerase II, subunit POLR2C/RPB3.
    
 0.812
CDL12_19982
Transcription initiation factor IIF, small subunit (RAP30).
    
 0.765
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.