STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_21089U3 small nucleolar ribonucleoprotein (snoRNP) component. (182 aa)    
Predicted Functional Partners:
CDL12_21776
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.999
CDL12_12612
Uncharacterized protein.
   
  0.999
CDL12_08535
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
  0.999
CDL12_08202
U3 small nucleolar ribonucleoprotein (snoRNP) component.
   
 0.999
CDL12_26147
WD40 repeat protein.
   
  0.998
CDL12_21591
Putative RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly.
   
 0.998
CDL12_17352
RNA 3'-terminal phosphate cyclase.
   
 0.998
CDL12_14608
Uncharacterized protein.
   
 0.998
CDL12_14594
RRP7 domain-containing protein.
   
 0.998
CDL12_04861
U3 snoRNP-associated protein (Contains WD40 repeats).
   
 0.998
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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