STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_19504Transglut_core2 domain-containing protein. (461 aa)    
Predicted Functional Partners:
CDL12_20391
Mitochondrial/chloroplast ribosomal protein S19.
   
  0.701
CDL12_11756
Ubiquitin/40S ribosomal protein S27a fusion.
   
  0.701
CDL12_05484
Ubiquitin/40S ribosomal protein S27a fusion.
   
  0.701
CDL12_01797
Ubiquitin/40S ribosomal protein S27a fusion.
   
  0.701
CDL12_05099
NEDD8-activating complex, catalytic component UBA3.
    
  0.680
CDL12_15391
Uncharacterized protein.
   
 0.669
CDL12_11682
Uncharacterized protein.
    
 0.669
CDL12_27342
Cullin; Belongs to the cullin family.
    
 0.661
CDL12_25125
Cullin; Belongs to the cullin family.
    
 0.661
CDL12_21033
Uncharacterized protein.
    
 0.661
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.