STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_15956RRM motif-containing protein. (227 aa)    
Predicted Functional Partners:
CDL12_02280
KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4.
   
 0.984
CDL12_29640
RRM motif-containing protein.
  
 
 
0.965
CDL12_02135
WD40 repeat protein.
   
 0.961
CDL12_22207
ATP-dependent RNA helicase.
   
 0.959
CDL12_05684
ATP-dependent RNA helicase.
   
 0.959
CDL12_03281
ATP-dependent RNA helicase.
   
 0.959
CDL12_13309
Nuclear matrix protein.
    
 0.946
CDL12_23080
Putative ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily.
   
 0.945
CDL12_17315
RNA helicase.
   
 0.945
CDL12_13770
Putative ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily.
   
 0.945
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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