STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_12424Uncharacterized protein. (405 aa)    
Predicted Functional Partners:
CDL12_21801
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.769
CDL12_08573
Protein required for biogenesis of the ribosomal 60S subunit.
   
    0.717
CDL12_11643
Putative nucleolar protein involved in ribosome biogenesis.
   
    0.610
CDL12_00067
WD repeat protein.
   
    0.576
CDL12_21983
60s ribosomal protein L30 isolog.
   
    0.550
CDL12_18813
Uncharacterized protein.
   
    0.534
CDL12_29068
DNA-dependent RNA polymerase I.
   
    0.529
CDL12_26829
Uncharacterized protein.
  
     0.476
CDL12_27781
NAB domain-containing protein.
  
     0.468
CDL12_14366
Uncharacterized protein.
  
     0.465
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.