STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_10871mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit). (587 aa)    
Predicted Functional Partners:
CDL12_20097
Putative signal transduction protein involved in RNA splicing.
   
 0.999
CDL12_15767
Putative signal transduction protein involved in RNA splicing.
   
 0.999
CDL12_04858
Putative signal transduction protein involved in RNA splicing.
   
 0.999
CDL12_05024
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.997
CDL12_22479
Polyadenylation factor I complex, subunit PFS2.
   
 0.991
CDL12_17244
Phosphoprotein phosphatase.
   
 0.991
CDL12_24274
CPSF_A domain-containing protein.
   
 0.989
CDL12_18208
Putative E3 ubiquitin ligase.
    
 0.983
CDL12_17296
Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2.
   
 0.983
CDL12_18518
Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2.
   
 0.982
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.