STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_10341Non-reducing end alpha-L-arabinofuranosidase. (623 aa)    
Predicted Functional Partners:
CDL12_29919
Polygalacturonase.
    
 0.703
CDL12_24679
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
    
  0.696
CDL12_20709
Polygalacturonase.
    
  0.696
CDL12_19548
Polygalacturonase.
    
  0.696
CDL12_17279
Polygalacturonase.
    
  0.696
CDL12_12455
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
    
  0.696
CDL12_28882
Ipi1_N domain-containing protein.
    
 0.690
CDL12_12002
BOP1NT domain-containing protein.
   
  0.639
CDL12_04638
CLP1_P domain-containing protein.
   
  0.633
CDL12_16268
Uncharacterized protein.
   
 0.623
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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