STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_06052Synaptobrevin/VAMP-like protein SEC22; Belongs to the synaptobrevin family. (218 aa)    
Predicted Functional Partners:
CDL12_13895
Membrin; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.985
CDL12_06672
SNARE protein SED5/Syntaxin 5; Belongs to the syntaxin family.
   
 0.985
CDL12_13169
SNARE protein SED5/Syntaxin 5; Belongs to the syntaxin family.
   
 0.983
CDL12_25680
Uncharacterized protein.
   
 0.981
CDL12_16814
SNARE protein Syntaxin 18/UFE1.
   
 0.980
CDL12_16289
Putative membrane protein.
    
 0.977
CDL12_16901
V-SNARE.
    
 0.952
CDL12_10955
V-SNARE.
    
 0.952
CDL12_09180
V-SNARE.
    
 0.952
CDL12_29144
SNARE protein YKT6, synaptobrevin/VAMP syperfamily; Belongs to the synaptobrevin family.
    
0.940
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.