STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_03054Ubiquitinyl hydrolase 1. (226 aa)    
Predicted Functional Partners:
CDL12_20391
Mitochondrial/chloroplast ribosomal protein S19.
    
  0.805
CDL12_11756
Ubiquitin/40S ribosomal protein S27a fusion.
    
  0.805
CDL12_05484
Ubiquitin/40S ribosomal protein S27a fusion.
    
  0.805
CDL12_01797
Ubiquitin/40S ribosomal protein S27a fusion.
    
  0.805
CDL12_25315
Ubiquitin-like domain-containing protein.
   
  0.632
CDL12_21964
OTU domain-containing protein.
      
 0.618
CDL12_15004
Phosphatidylinositol 4-kinase; Belongs to the PI3/PI4-kinase family.
   
  0.616
CDL12_07160
Phosphatidylinositol 4-kinase; Belongs to the PI3/PI4-kinase family.
   
  0.616
CDL12_00108
Phosphatidylinositol 4-kinase; Belongs to the PI3/PI4-kinase family.
   
  0.616
CDL12_29962
Ubiquitin-like protein.
    
  0.611
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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