CDL12_01751 protein (Handroanthus impetiginosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CDL12_01751

Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (781 aa)

Predicted Functional Partners:

CDL12_10308

0.992

CDL12_08883

0.984

CDL12_02478

0.984

CDL12_30537

0.972

CDL12_27640

0.972

CDL12_18993

0.972

CDL12_03642

0.972

CDL12_29873

0.969

CDL12_12856

0.969

CDL12_03094

0.969

Your Current Organism:

Handroanthus impetiginosus

NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDL12_01751	CDL12_02478	A0A2G9I6W3	A0A2G9I4V4	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	0.984
CDL12_01751	CDL12_03094	A0A2G9I6W3	A0A2G9I3K5	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.	0.969
CDL12_01751	CDL12_03642	A0A2G9I6W3	A0A2G9I1L1	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SEC31.	0.972
CDL12_01751	CDL12_08883	A0A2G9I6W3	A0A2G9HLN6	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	0.984
CDL12_01751	CDL12_10308	A0A2G9I6W3	A0A2G9HHL2	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SFB3.	0.992
CDL12_01751	CDL12_12856	A0A2G9I6W3	A0A2G9HAG3	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.	0.969
CDL12_01751	CDL12_18993	A0A2G9I6W3	A0A2G9GT10	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Transcription factor Abd-B, contains HOX domain.	0.972
CDL12_01751	CDL12_27640	A0A2G9I6W3	A0A2G9G3H8	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.972
CDL12_01751	CDL12_29873	A0A2G9I6W3	A0A2G9FX69	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.969
CDL12_01751	CDL12_30537	A0A2G9I6W3	A0A2G9FV99	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein.	0.972
CDL12_02478	CDL12_01751	A0A2G9I4V4	A0A2G9I6W3	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.984
CDL12_02478	CDL12_03094	A0A2G9I4V4	A0A2G9I3K5	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.	0.969
CDL12_02478	CDL12_03642	A0A2G9I4V4	A0A2G9I1L1	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Vesicle coat complex COPII, subunit SEC31.	0.971
CDL12_02478	CDL12_10308	A0A2G9I4V4	A0A2G9HHL2	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Vesicle coat complex COPII, subunit SFB3.	0.992
CDL12_02478	CDL12_12856	A0A2G9I4V4	A0A2G9HAG3	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.	0.969
CDL12_02478	CDL12_18993	A0A2G9I4V4	A0A2G9GT10	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Transcription factor Abd-B, contains HOX domain.	0.971
CDL12_02478	CDL12_27640	A0A2G9I4V4	A0A2G9G3H8	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	Uncharacterized protein.	0.971
CDL12_02478	CDL12_29873	A0A2G9I4V4	A0A2G9FX69	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.969
CDL12_02478	CDL12_30537	A0A2G9I4V4	A0A2G9FV99	Vesicle coat complex COPII, subunit SEC24/subunit SFB2.	WD_REPEATS_REGION domain-containing protein.	0.971
CDL12_03094	CDL12_01751	A0A2G9I3K5	A0A2G9I6W3	Vesicle coat complex COPII, subunit SEC13; Belongs to the WD repeat SEC13 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.969

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About