STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL12_00954S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. (385 aa)    
Predicted Functional Partners:
CDL12_28070
Methionine synthase II (Cobalamin-independent).
  
 0.941
CDL12_23281
Methionine synthase II (Cobalamin-independent).
  
 0.941
CDL12_13891
Methionine synthase II (Cobalamin-independent).
  
 0.941
CDL12_07851
Homocysteine S-methyltransferase.
  
 
 0.905
CDL12_04742
Homocysteine S-methyltransferase.
  
 
 0.905
CDL12_29862
Aminotran_1_2 domain-containing protein.
  
 0.899
CDL12_11626
Tyrosine aminotransferase.
  
 0.899
CDL12_27650
1-aminocyclopropane-1-carboxylate synthase.
  
 0.896
CDL12_14187
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
 
 0.896
CDL12_26474
Kynurenine aminotransferase, glutamine transaminase K.
  
 0.893
Your Current Organism:
Handroanthus impetiginosus
NCBI taxonomy Id: 429701
Other names: H. impetiginosus, Handroanthus impetiginosus (Mart. ex DC.) Mattos, Tabebuia impetiginosa, Tabebuia impetiginosa (Mart. ex DC.) Standl., Tabebuia palmeri, Tabebuia palmeri Rose
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