Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KKB08177.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)    
Predicted Functional Partners:
KKB08178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.965
KKB08179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.935
KKB08183.1
CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.903
KKB08181.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
KKB08180.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.872
KKB08700.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.860
KKB08185.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.849
KKB08186.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.838
KKB08187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.789
KKB08182.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
 
    0.764
Your Current Organism:
Devosia chinhatensis
NCBI taxonomy Id: 429727
Other names: CCM 7426, D. chinhatensis, Devosia chinhatensis Kumar et al. 2008, Devosia sp. IPL18, MTCC 8593, strain IPL18
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