A0A182JRN8 protein (Anopheles christyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A182JRN8

Uncharacterized protein; Belongs to the DEAD box helicase family. (794 aa)

Predicted Functional Partners:

A0A182K4G6

0.975

A0A182JNN4

0.961

A0A182JVG6

0.961

A0A182K074

0.955

A0A182JNN9

0.942

A0A182KD43

0.936

A0A182JUX6

0.902

A0A182JQM6

0.897

A0A182JUW5

0.897

A0A182K857

0.896

Your Current Organism:

Anopheles christyi

NCBI taxonomy Id: 43041
Other names: A. christyi

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A182JNN4	A0A182JNN9	Uncharacterized protein.	BP28CT domain-containing protein.	0.979
A0A182JNN4	A0A182JQM6	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A182JNN4	A0A182JRN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.961
A0A182JNN4	A0A182JUW5	Uncharacterized protein.	Uncharacterized protein.	0.869
A0A182JNN4	A0A182JUX6	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.764
A0A182JNN4	A0A182JVG6	Uncharacterized protein.	Nop domain-containing protein.	0.932
A0A182JNN4	A0A182K074	Uncharacterized protein.	CBF domain-containing protein.	0.871
A0A182JNN4	A0A182K4G6	Uncharacterized protein.	Uncharacterized protein.	0.927
A0A182JNN4	A0A182K857	Uncharacterized protein.	Uncharacterized protein.	0.868
A0A182JNN4	A0A182KD43	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.660
A0A182JNN9	A0A182JNN4	BP28CT domain-containing protein.	Uncharacterized protein.	0.979
A0A182JNN9	A0A182JQM6	BP28CT domain-containing protein.	Uncharacterized protein.	0.984
A0A182JNN9	A0A182JRN8	BP28CT domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.942
A0A182JNN9	A0A182JUW5	BP28CT domain-containing protein.	Uncharacterized protein.	0.964
A0A182JNN9	A0A182JUX6	BP28CT domain-containing protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.992
A0A182JNN9	A0A182JVG6	BP28CT domain-containing protein.	Nop domain-containing protein.	0.997
A0A182JNN9	A0A182K074	BP28CT domain-containing protein.	CBF domain-containing protein.	0.985
A0A182JNN9	A0A182K4G6	BP28CT domain-containing protein.	Uncharacterized protein.	0.986
A0A182JNN9	A0A182K857	BP28CT domain-containing protein.	Uncharacterized protein.	0.980
A0A182JNN9	A0A182KD43	BP28CT domain-containing protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.984