STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET07884.1Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain. (227 aa)    
Predicted Functional Partners:
SET07939.1
Glycosyl transferase family 2.
 
     0.916
SET07856.1
4-amino-4-deoxy-L-arabinose transferase.
 
     0.849
SET07970.1
Two-component system, OmpR family, sensor histidine kinase QseC.
       0.539
SET08010.1
Two-component system, OmpR family, response regulator.
       0.539
SET43392.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
  
     0.482
SET91556.1
Hypothetical protein.
  
     0.458
SET08074.1
Long-chain acyl-CoA synthetase (AMP-forming).
  
   0.454
SET85177.1
Thioredoxin-like.
  
     0.412
Your Current Organism:
Marinobacter segnicrescens
NCBI taxonomy Id: 430453
Other names: CGMCC 1.6489, LMG 23928, LMG:23928, M. segnicrescens, Marinobacter segnicrescens Guo et al. 2007, strain SS011B1-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.