STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET54788.1Pilus retraction ATPase PilT. (344 aa)    
Predicted Functional Partners:
SET50293.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.849
SET50269.1
Type IV pilus assembly protein PilC.
 
  
 0.826
SET68758.1
General secretion pathway protein F.
 
  
 0.814
SET37564.1
Type IV pilus assembly protein PilM.
 
   
 0.781
SET37652.1
Type IV pilus assembly protein PilQ.
 
   
 0.714
SET54750.1
Twitching motility protein PilU.
 
  
0.705
SET94830.1
Type IV pilus assembly protein PilE.
 
   
 0.701
SET50220.1
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
   
 0.674
SET37608.1
Type IV pilus assembly protein PilO.
 
  
 0.622
SET54835.1
Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.619
Your Current Organism:
Marinobacter segnicrescens
NCBI taxonomy Id: 430453
Other names: CGMCC 1.6489, LMG 23928, LMG:23928, M. segnicrescens, Marinobacter segnicrescens Guo et al. 2007, strain SS011B1-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.