STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET86105.1DDE superfamily endonuclease. (98 aa)    
Predicted Functional Partners:
SET84517.1
DDE superfamily endonuclease.
 
     0.774
SES83689.1
Winged helix-turn helix.
  
     0.773
SET35394.1
Winged helix-turn helix.
  
     0.773
SES94631.1
Winged helix-turn helix.
  
     0.772
SET88540.1
Winged helix-turn helix.
  
     0.772
SET93423.1
Winged helix-turn helix.
  
     0.772
SES83752.1
Transposase, IS605 OrfB family, central region.
    
   0.400
SET75759.1
Putative transposase.
    
   0.400
Your Current Organism:
Marinobacter segnicrescens
NCBI taxonomy Id: 430453
Other names: CGMCC 1.6489, LMG 23928, LMG:23928, M. segnicrescens, Marinobacter segnicrescens Guo et al. 2007, strain SS011B1-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.