Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOM77118.1Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
AOM77119.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.945
AOM77116.1
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.916
AOM77115.1
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.860
AOM77117.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
AOM77122.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.785
AOM78940.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.779
AOM77124.1
Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.768
AOM77121.1
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
AOM77123.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.702
AOM77120.1
Cytochrome C552; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
Your Current Organism:
Pedobacter steynii
NCBI taxonomy Id: 430522
Other names: CIP 109507, DSM 19110, P. steynii, Pedobacter steynii Muurholm et al. 2007, WB 2.3-45
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