STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOM78943.1Histone H1; Derived by automated computational analysis using gene prediction method: Protein Homology. (58 aa)    
Predicted Functional Partners:
AOM77147.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
AOM78315.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
AOM79027.1
RNA pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
AOM78334.1
Fructose-6-phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
AOM80416.1
Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.624
AOM80300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
AOM78316.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
AOM78320.1
Cytochrome C biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
  
     0.563
AOM80318.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
dinB-2
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.528
Your Current Organism:
Pedobacter steynii
NCBI taxonomy Id: 430522
Other names: CIP 109507, DSM 19110, P. steynii, Pedobacter steynii Muurholm et al. 2007, WB 2.3-45
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.