STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE06183.1Putative ABC transport system ATP-binding protein. (232 aa)    
Predicted Functional Partners:
SFE51152.1
Putative ABC transport system permease protein.
 
 0.994
SFE06155.1
Putative ABC transport system permease protein.
 
 0.965
SFF01241.1
Putative ABC transport system permease protein.
 
 0.892
SFE06198.1
HlyD family secretion protein.
  
 
 0.801
SFE40951.1
Putative ABC transport system permease protein.
 
 0.723
SFF10835.1
ABC-type lipoprotein export system, ATPase component.
 
0.678
SFE76329.1
ABC-type lipoprotein export system, ATPase component.
 
0.676
SFE90144.1
ABC-2 type transport system ATP-binding protein.
  
  
 0.662
SFE94726.1
Putative ABC transport system permease protein.
  
 0.653
SFE13603.1
ABC-2 type transport system ATP-binding protein.
 
  
0.617
Your Current Organism:
Trichococcus pasteurii
NCBI taxonomy Id: 43064
Other names: ATCC 35945, CCUG 37395, CIP 104580, DSM 2381, Lactosphaera pasteurii, Ruminococcus pasteurii, T. pasteurii, strain KoTa2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.