STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE69662.1Holin-like protein. (123 aa)    
Predicted Functional Partners:
SFE69690.1
Putative effector of murein hydrolase.
 
  
 0.995
SFE69750.1
Energy-coupling factor transport system substrate-specific component.
       0.440
SFE69726.1
Uridine phosphorylase.
       0.439
SFE69777.1
Energy-coupling factor transport system permease protein.
       0.426
SFE69807.1
Energy-coupling factor transport system ATP-binding protein.
       0.426
SFE69832.1
Energy-coupling factor transport system ATP-binding protein.
       0.426
Your Current Organism:
Trichococcus pasteurii
NCBI taxonomy Id: 43064
Other names: ATCC 35945, CCUG 37395, CIP 104580, DSM 2381, Lactosphaera pasteurii, Ruminococcus pasteurii, T. pasteurii, strain KoTa2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.