STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFF04242.1Transposase, IS4 family. (532 aa)    
Predicted Functional Partners:
SFF04256.1
Hypothetical protein.
       0.494
SFF04279.1
Hypothetical protein.
       0.494
SFE62902.1
Hypothetical protein.
  
     0.489
SFF04301.1
Hypothetical protein.
       0.487
SFE53357.1
Prenyltransferase-like.
  
     0.456
SFE67955.1
L-cystine transport system substrate-binding protein.
  
     0.429
SFE52575.1
Alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
     0.421
SFE69572.1
Uncharacterized protein YbcI.
  
     0.417
Your Current Organism:
Trichococcus pasteurii
NCBI taxonomy Id: 43064
Other names: ATCC 35945, CCUG 37395, CIP 104580, DSM 2381, Lactosphaera pasteurii, Ruminococcus pasteurii, T. pasteurii, strain KoTa2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.