Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFE29636.1 | SFE93523.1 | SAMN04488086_102298 | SAMN04488086_11560 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Serine protease Do. | 0.473 |
SFE29636.1 | SFF04816.1 | SAMN04488086_102298 | SAMN04488086_12227 | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | Trypsin-like peptidase domain-containing protein. | 0.538 |
SFE45769.1 | SFE93523.1 | SAMN04488086_10460 | SAMN04488086_11560 | Von Willebrand factor type A domain-containing protein. | Serine protease Do. | 0.487 |
SFE45769.1 | SFF04816.1 | SAMN04488086_10460 | SAMN04488086_12227 | Von Willebrand factor type A domain-containing protein. | Trypsin-like peptidase domain-containing protein. | 0.487 |
SFE45769.1 | rplT | SAMN04488086_10460 | SAMN04488086_10966 | Von Willebrand factor type A domain-containing protein. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.562 |
SFE45769.1 | rplU | SAMN04488086_10460 | SAMN04488086_12331 | Von Willebrand factor type A domain-containing protein. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.489 |
SFE45769.1 | rpsG | SAMN04488086_10460 | SAMN04488086_101245 | Von Willebrand factor type A domain-containing protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.468 |
SFE69750.1 | SFE93523.1 | SAMN04488086_108106 | SAMN04488086_11560 | Energy-coupling factor transport system substrate-specific component. | Serine protease Do. | 0.502 |
SFE69750.1 | SFF04816.1 | SAMN04488086_108106 | SAMN04488086_12227 | Energy-coupling factor transport system substrate-specific component. | Trypsin-like peptidase domain-containing protein. | 0.502 |
SFE69750.1 | glpK | SAMN04488086_108106 | SAMN04488086_11279 | Energy-coupling factor transport system substrate-specific component. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.427 |
SFE69750.1 | glpK-2 | SAMN04488086_108106 | SAMN04488086_12720 | Energy-coupling factor transport system substrate-specific component. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.427 |
SFE93523.1 | SFE29636.1 | SAMN04488086_11560 | SAMN04488086_102298 | Serine protease Do. | Carboxyl-terminal processing protease; Belongs to the peptidase S41A family. | 0.473 |
SFE93523.1 | SFE45769.1 | SAMN04488086_11560 | SAMN04488086_10460 | Serine protease Do. | Von Willebrand factor type A domain-containing protein. | 0.487 |
SFE93523.1 | SFE69750.1 | SAMN04488086_11560 | SAMN04488086_108106 | Serine protease Do. | Energy-coupling factor transport system substrate-specific component. | 0.502 |
SFE93523.1 | SFF04816.1 | SAMN04488086_11560 | SAMN04488086_12227 | Serine protease Do. | Trypsin-like peptidase domain-containing protein. | 0.582 |
SFE93523.1 | glpK | SAMN04488086_11560 | SAMN04488086_11279 | Serine protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.571 |
SFE93523.1 | glpK-2 | SAMN04488086_11560 | SAMN04488086_12720 | Serine protease Do. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.571 |
SFE93523.1 | rplT | SAMN04488086_11560 | SAMN04488086_10966 | Serine protease Do. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.419 |
SFE93523.1 | rplU | SAMN04488086_11560 | SAMN04488086_12331 | Serine protease Do. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.471 |
SFE93523.1 | rpsG | SAMN04488086_11560 | SAMN04488086_101245 | Serine protease Do. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.421 |
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