STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FLM9_1549Possible transporter, membrane component. (251 aa)    
Predicted Functional Partners:
FLM9_310
Hypothetical protein.
 
 0.999
FLM9_311
Possible ABC transporter, ATP-binding component.
 
 0.999
FLM9_594
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
  
  0.795
FLM9_1548
Putative GPH family sugar transporter.
       0.733
FLM9_530
Outer membrane protein/protective antigen OMA87.
 
     0.720
FLM9_593
Unclassified ABC-type transport system permease.
  
   
 0.686
FLM9_1550
Glycerol dehydrogenase and related enzymes.
       0.677
plsY
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.632
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.108); Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
     0.626
FLM9_1551
FIG01149882: hypothetical protein.
       0.620
Your Current Organism:
Synechococcus spongiarum
NCBI taxonomy Id: 431041
Other names: C. Synechococcus spongiarum, Candidatus Synechococcus spongiarum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.