G0R7D7_HYPJQ protein (Trichoderma reesei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

G0R7D7_HYPJQ

Predicted protein. (432 aa)

Predicted Functional Partners:

G0RH47_HYPJQ

0.823

G0RK98_HYPJQ

0.746

G0RPQ9_HYPJQ

0.732

rpl5

0.710

rpl38

0.704

G0RKA8_HYPJQ

0.704

rpl11

0.695

G0R7F2_HYPJQ

0.689

rpl8

0.689

rpl30

0.686

Your Current Organism:

Trichoderma reesei

NCBI taxonomy Id: 431241
Other names: T. reesei QM6a, Trichoderma reesei QM6a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G0R7D7_HYPJQ	G0R7F2_HYPJQ	G0R7D7	G0R7F2	Predicted protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.689
G0R7D7_HYPJQ	G0RH47_HYPJQ	G0R7D7	G0RH47	Predicted protein.	Protein transport protein sec61 alpha subunit.	0.823
G0R7D7_HYPJQ	G0RK98_HYPJQ	G0R7D7	G0RK98	Predicted protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.746
G0R7D7_HYPJQ	G0RKA8_HYPJQ	G0R7D7	G0RKA8	Predicted protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.704
G0R7D7_HYPJQ	G0RPQ9_HYPJQ	G0R7D7	G0RPQ9	Predicted protein.	Predicted protein.	0.732
G0R7D7_HYPJQ	rpl11	G0R7D7	G0RCQ5	Predicted protein.	60S ribosomal protein L11, L5 family; Belongs to the universal ribosomal protein uL5 family.	0.695
G0R7D7_HYPJQ	rpl30	G0R7D7	G0RTA0	Predicted protein.	Ribosomal protein L30.	0.686
G0R7D7_HYPJQ	rpl38	G0R7D7	G0RGP3	Predicted protein.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.704
G0R7D7_HYPJQ	rpl5	G0R7D7	G0RSJ8	Predicted protein.	Ribosomal protein L5.	0.710
G0R7D7_HYPJQ	rpl8	G0R7D7	G0RWG3	Predicted protein.	Ribosomal protein L8.	0.689
G0R7F2_HYPJQ	G0R7D7_HYPJQ	G0R7F2	G0R7D7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Predicted protein.	0.689
G0R7F2_HYPJQ	G0RH47_HYPJQ	G0R7F2	G0RH47	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Protein transport protein sec61 alpha subunit.	0.983
G0R7F2_HYPJQ	G0RK98_HYPJQ	G0R7F2	G0RK98	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.854
G0R7F2_HYPJQ	G0RKA8_HYPJQ	G0R7F2	G0RKA8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
G0R7F2_HYPJQ	G0RPQ9_HYPJQ	G0R7F2	G0RPQ9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Predicted protein.	0.846
G0R7F2_HYPJQ	rpl11	G0R7F2	G0RCQ5	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L11, L5 family; Belongs to the universal ribosomal protein uL5 family.	0.999
G0R7F2_HYPJQ	rpl30	G0R7F2	G0RTA0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L30.	0.999
G0R7F2_HYPJQ	rpl38	G0R7F2	G0RGP3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
G0R7F2_HYPJQ	rpl5	G0R7F2	G0RSJ8	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L5.	0.999
G0R7F2_HYPJQ	rpl8	G0R7F2	G0RWG3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L8.	0.999