gal10 protein (Trichoderma reesei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gal10

UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (368 aa)

Predicted Functional Partners:

gal1

0.999

gal7

0.999

ugp1

0.981

G0RI16_HYPJQ

0.970

G0RTY0_HYPJQ

0.963

G0RSN4_HYPJQ

0.772

G0R9E3_HYPJQ

0.745

G0RNR3_HYPJQ

0.736

G0RE20_HYPJQ

0.734

G0RRG0_HYPJQ

0.734

Your Current Organism:

Trichoderma reesei

NCBI taxonomy Id: 431241
Other names: T. reesei QM6a, Trichoderma reesei QM6a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G0R9E3_HYPJQ	gal10	G0R9E3	G0RPH9	Predicted protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.745
G0RE20_HYPJQ	G0RI16_HYPJQ	G0RE20	G0RI16	Trehalase.	Aldose-1-epimerase.	0.734
G0RE20_HYPJQ	G0RRG0_HYPJQ	G0RE20	G0RRG0	Trehalase.	Trehalase.	0.907
G0RE20_HYPJQ	G0RSN4_HYPJQ	G0RE20	G0RSN4	Trehalase.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family.	0.459
G0RE20_HYPJQ	gal10	G0RE20	G0RPH9	Trehalase.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.734
G0RE20_HYPJQ	ugp1	G0RE20	G0R6Q6	Trehalase.	UTP--glucose-1-phosphate uridylyltransferase.	0.429
G0RI16_HYPJQ	G0RE20_HYPJQ	G0RI16	G0RE20	Aldose-1-epimerase.	Trehalase.	0.734
G0RI16_HYPJQ	G0RNR3_HYPJQ	G0RI16	G0RNR3	Aldose-1-epimerase.	Predicted protein.	0.736
G0RI16_HYPJQ	G0RRG0_HYPJQ	G0RI16	G0RRG0	Aldose-1-epimerase.	Trehalase.	0.734
G0RI16_HYPJQ	G0RSN4_HYPJQ	G0RI16	G0RSN4	Aldose-1-epimerase.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family.	0.772
G0RI16_HYPJQ	G0RTY0_HYPJQ	G0RI16	G0RTY0	Aldose-1-epimerase.	Predicted protein.	0.653
G0RI16_HYPJQ	gal1	G0RI16	G0R8M9	Aldose-1-epimerase.	Galactokinase.	0.999
G0RI16_HYPJQ	gal10	G0RI16	G0RPH9	Aldose-1-epimerase.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.970
G0RI16_HYPJQ	gal7	G0RI16	G0RTP4	Aldose-1-epimerase.	Galactose-1-phosphate uridylyltransferase; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.	0.999
G0RI16_HYPJQ	ugp1	G0RI16	G0R6Q6	Aldose-1-epimerase.	UTP--glucose-1-phosphate uridylyltransferase.	0.821
G0RNR3_HYPJQ	G0RI16_HYPJQ	G0RNR3	G0RI16	Predicted protein.	Aldose-1-epimerase.	0.736
G0RNR3_HYPJQ	G0RSN4_HYPJQ	G0RNR3	G0RSN4	Predicted protein.	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family.	0.996
G0RNR3_HYPJQ	G0RTY0_HYPJQ	G0RNR3	G0RTY0	Predicted protein.	Predicted protein.	0.512
G0RNR3_HYPJQ	gal1	G0RNR3	G0R8M9	Predicted protein.	Galactokinase.	0.783
G0RNR3_HYPJQ	gal10	G0RNR3	G0RPH9	Predicted protein.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.736