STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_100Putative DNA replication protein; PHAST result (e-value 8e-25). (185 aa)    
Predicted Functional Partners:
AGA_1566
Hypothetical protein; COG: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
 0.943
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.926
AGA_2416
Unnamed protein product; Belongs to the cytochrome P450 family.
  
 0.906
dadB
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.857
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.809
AGA_2002
Hypothetical protein predicted by Glimmer/Critica.
  
 
 0.809
AGA_2016
Acyl carrier protein; Phosphopantetheine-binding.
  
 
 0.809
AGA_1190
Short-chain dehydrogenase/reductase SDR.
  
 
 0.788
fabD
malonyl-CoA-[acyl-carrier-protein (ACP)] transacylase.
  
 
 0.788
wcbP
Short-chain dehydrogenase/reductase SDR.
  
 
 0.788
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.