STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1006TonB-dependent receptor, beta-barrel. (471 aa)    
Predicted Functional Partners:
AGA_1007
TonB-dependent receptor, plug.
 
  0.994
AGA_1094
COG: Periplasmic protein TonB, links inner and outer membranes.
 
 0.841
AGA_1011
tonB_Cterm: TonB family C-terminal domain.
  
 0.831
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
 
 0.831
AGA_2525
Outer membrane protein.
  
 
 
 0.789
AGA_341
TonB family protein.
  
 0.783
AGA_1811
Tail fiber; PHAST result (e-value 3e-07).
    
 
 0.721
AGA_1968
Hypothetical protein.
    
 
 0.721
AGA_75
Burkholderia phage Bcep781 gp31; PHAST result (e-value 1e-13).
    
 
 0.721
AGA_901
Burkholderia phage Bcep781 gp31; PHAST result (e-value 2e-11).
    
 
 0.721
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.