STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
garL2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family. (277 aa)    
Predicted Functional Partners:
AGA_1005
Succinate-semialdehyde dehydrogenase (NADP+).
   
 
  0.816
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
     0.797
uxaA
Altronate hydrolase.
 
 
  0.779
ilvD-2
Dihydroxy-acid dehydratase.
 
     0.775
ykfB
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.726
AGA_2144
6-phosphogluconate dehydrogenase, NAD-binding domain.
  
 
 0.706
mmsA
Methylmalonate-semialdehyde dehydrogenase.
  
 
  0.677
lysR
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.535
attK
Succinate-semialdehyde dehydrogenase (NADP+).
   
 
  0.534
attK-2
Succinate-semialdehyde dehydrogenase (NADP+).
   
 
  0.534
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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