Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGA_1048DoxD-like family; DoxX. (291 aa)    
Predicted Functional Partners:
AGA_1049
Hypothetical protein predicted by Glimmer/Critica; Protein of unknown function DUF336.
 
     0.832
AGA_2465
D-amino acid oxidase; FAD dependent oxidoreductase.
  
     0.755
AGA_769
Hypothetical protein.
  
     0.738
AGA_1040
Hypothetical protein; COG: FOG: WD40 repeat.
 
    0.737
gidA
Glucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
 
 0.702
AGA_2278
Hypothetical protein.
  
     0.683
AGA_1967
Hypothetical protein; COG: Predicted peptidase.
  
     0.681
AGA_1861
Rhodanese domain-containing protein; Rhodanese-like.
  
 
 0.673
AGA_1801
Transposase IS3/IS911.
  
     0.651
AGA_347
Transposase IS3/IS911.
  
     0.651
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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