Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGA_1052ABC transport system substrate-binding protein; Aliphatic sulfonates family. (327 aa)    
Predicted Functional Partners:
AGA_1053
Binding-protein-dependent transport systems inner membrane component.
 
 0.980
AGA_1054
Nitrate ABC transporter, ATP-binding proteins C and D.
 
  0.976
AGA_1417
Binding-protein-dependent transport systems inner membrane component.
  
 0.915
AGA_1866
Binding-protein-dependent transport systems inner membrane component.
 
 0.912
AGA_1058
UreA carboxylase.
 
   
 0.902
AGA_1056
Hypothetical protein; Domain of unknown function DUF1989.
 
     0.890
AGA_1057
Hypothetical protein; Domain of unknown function DUF1989.
 
     0.878
copG
Transcriptional regulator NikR, CopG family; Transcriptional regulator.
 
     0.864
AGA_1865
ABC transporter related.
 
  0.857
atzF
aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; [EC:6.3.5.6 6.3.5.7]; amidase.
 
     0.804
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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