STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1176Protein of unknown function DUF1150. (88 aa)    
Predicted Functional Partners:
lon
ATP-dependent Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
    
   0.775
hspA
Heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
       0.766
AGA_766
Hypothetical protein.
  
     0.660
AGA_1562
Hypothetical protein.
  
     0.655
hisA
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.
  
     0.585
AGA_1677
Endonuclease/exonuclease/phosphatase.
  
     0.581
AGA_2016
Acyl carrier protein; Phosphopantetheine-binding.
  
     0.574
AGA_1266
Hypothetical protein.
  
     0.558
AGA_2023
Fatty acid hydroxylase.
  
     0.550
AGA_1174
Hypothetical protein predicted by Glimmer/Critica.
       0.537
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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