STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yxlAPermease for cytosine/purines uracil thiamine allantoin; Belongs to the purine-cytosine permease (2.A.39) family. (417 aa)    
Predicted Functional Partners:
pyrB
Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.776
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
   
    0.772
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
   
    0.770
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
     
 0.584
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
     
  0.579
AGA_130
Glycosyl transferase, family 25.
  
     0.575
AGA_2558
COG: Predicted integral membrane protein.
  
     0.575
AGA_143
Hypothetical protein.
  
     0.563
AGA_703
Integrase family protein; Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
  
     0.538
thiD
Phosphomethylpyrimidine kinase.
  
  
 0.494
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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