Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_1276Hypothetical protein. (194 aa)    
Predicted Functional Partners:
AGA_1274
Hypothetical protein.
       0.773
AGA_1275
Hypothetical protein.
       0.773
AGA_1277
Hypothetical protein.
       0.773
hyfG
Hypothetical protein; COG: NADH:ubiquinone oxidoreductase 49 kD subunit 7.
       0.773
AGA_1279
NADH ubiquinone oxidoreductase, 20 kDa subunit.
       0.645
AGA_1273
Methyltransferase type 11.
       0.628
cobT-2
Cobaltochelatase CobT.
    
  0.574
trbG
P-type conjugative transfer protein TrbG.
    
   0.536
AGA_1211
Adenosylcobalamin-dependent diol dehydratase gamma subunit; Belongs to the Cob(I)alamin adenosyltransferase family.
     
  0.507
cobN
Cobaltochelatase CobN.
     
  0.507
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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