STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_128Protein of unknown function DUF330. (196 aa)    
Predicted Functional Partners:
pqiB
Hypothetical protein; Mammalian cell entry related.
 
     0.931
AGA_125
Protein of unknown function DUF140.
 
     0.868
AGA_126
ABC transporter related.
 
     0.854
AGA_130
Glycosyl transferase, family 25.
 
     0.613
glf
UDP-galactopyranose mutase.
       0.603
pqiB-2
Paraquat-inducible protein B; Mammalian cell entry related.
 
   
 0.561
oprO-2
Phosphate-selective porin O/P.
  
     0.559
AGA_1198
Hypothetical protein.
  
     0.550
pqiA
Paraquat-inducible protein A, pqiA_fam: integral membrane protein, PqiA family.
 
  
 0.546
oprO
Porin O/P polyphosphate-selective.
  
     0.516
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.